In short
Deactivating a mailbox in NinjaOne SaaS Backup stops its backup and the user's login, but keeps the data already backed up. On the Archiver plan a deactivated mailbox archives no new mail, stays available to administrators and can be reactivated. Up to 20% of purchased seats can be deactivated without using a licence.
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What deactivate does
In NinjaOne SaaS Backup, deactivating a mailbox is the alternative to deleting it. NinjaOne's help centre says that when a mailbox is deactivated, its backup stops, the user's login access is disabled, and the previously backed-up data is retained. Deleting is different: when a mailbox is deleted, the backed-up data is purged.
On the Archiver plan the rule is stricter. NinjaOne's End-User Portal FAQ says archived mailboxes cannot be deleted in the portal, only deactivated; deleting archived data is a manual request to NinjaOne support. Once an archive mailbox is deactivated:
- It does not archive any new email
- Only administrators can access it, and the user's own access is switched off
- The mail already archived stays in place under your retention policies
- It can be reactivated later if the account comes back into use
That makes deactivation the normal way to handle a leaver: their mail stays searchable for eDiscovery and subject access requests, without the archive continuing to collect mail for an account nobody uses.
Inactive, Deactivated and empty: the statuses explained
The portal shows several states, and they are easy to confuse.
| Status | What triggers it | What happens |
|---|---|---|
| Active | A valid mail licence is assigned in Microsoft 365 or Google Workspace | Backup runs as normal; on Archiver, journaling continues |
| Inactive (licence removed) | The account no longer has a valid mail licence in the source tenant | NinjaOne marks it Inactive and backup stops; existing data stays |
| Deactivated automatically | The mailbox is deleted from the mail server and removed from the group registered for backup | NinjaOne deactivates its backup automatically |
| Deactivated manually | An administrator chooses Deactivate in the End-User Portal | Backup stops; the tooltip records that it was deactivated by hand |
| Empty mailbox | The mailbox holds no data | Shown as deactivated, but NinjaOne keeps checking and reactivates it once data appears; empty inactive mailboxes do not use a licence |
NinjaOne's portal colour-codes these: orange for an inactive mailbox that was deactivated, grey for an inactive mailbox with no data on the Microsoft 365 side. Backup errors are different again: NinjaOne retries them automatically, and the backup only stops when a mailbox is deactivated or inactive.
Note the clash of terms with Microsoft. In Microsoft 365, an inactive mailbox is a mailbox kept after the user account is deleted because a hold or retention policy applied to it. That is a Microsoft feature inside your tenant, and it is separate from NinjaOne's Inactive status. Our former employee mailbox guide covers both.
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The deactivated seat allowance
Deactivated mailboxes do not all count against your licences. NinjaOne's help centre article "Deactivated Mailbox Threshold" says that, of the total purchased seats, 20% can be deactivated without using the organisation's licence.
NinjaOne's own example: if an organisation buys 10 seats, it can keep 2 mailboxes in Deactivated status without using a licence. Deactivate more than that, and the extra mailboxes use licences. Seat usage is shown on the End-User Portal dashboard and on the organisation's details page.
Two related features affect the count:
- Auto-licensing adjusts the seat count up or down as mailboxes are added to or removed from backup
- Autodiscover scans the tenant once a day and adds new users, with an exclusion list for accounts you leave out
Allowances like this can change, and how leavers count depends on your bundle, seat numbers and retention. We confirm how leavers count towards seats and retention when we quote, so the numbers match your staff turnover rather than an example.
Handling a leaver step by step
A typical leaver process for an organisation using Archiver looks like this:
- Check whether the leaver's mail is subject to a legal hold, a dispute or a regulatory retention period before anything is removed
- Make sure the mailbox has been captured: on Archiver, journaling has copied mail since the account was added, and the initial backup took existing mail
- Agree who needs access to the leaver's mail (a manager, HR or compliance) and grant it through roles rather than by sharing a password
- Remove the user's licence or account in Microsoft 365 or Google Workspace in line with your process; NinjaOne then shows the mailbox as Inactive or deactivates it
- Deactivate the mailbox in the End-User Portal if it was not deactivated automatically, so the user's login is disabled
- Let your retention policy govern how long the archived mail is kept, and record the decision
The order matters on the platform side. NinjaOne says its backups preserve data through offboarding and account changes, but only mail captured before the account goes can be kept. Microsoft keeps a deleted user's mailbox for 30 days unless a hold or retention policy makes it an inactive mailbox, and Google warns that if you delete a user or a required licence, their data might be irreversibly purged and no longer available to Vault. Capture first, then remove.
Is email archiving for leavers the right fit for you?
We will check it against your systems and requirements and recommend the right option.
Privacy, access and HR points
A leaver's mailbox holds personal data about them and about everyone they wrote to, so access needs a reason and a record.
- Keep it under your retention policy, and delete it when the period ends; UK GDPR's storage limitation principle applies to archives too (see email retention and UK GDPR)
- Give access through compliance roles, so searches are logged in the audit log, rather than reopening the account
- Use eDiscovery with a Data Protection Officer review when you search a leaver's mail for a dispute or request
- Tell staff in your policies that business email is retained and may be searched after they leave
This is general information, not legal advice; take advice on employment or data protection questions specific to your organisation.
How Forever Systems helps with leavers
We set up NinjaOne Archiver so that leavers are a routine step rather than a scramble. That means agreeing the leaver process with you, mapping it to roles and retention policies, checking how deactivated seats and auto-licensing will affect your licence count, and showing your administrators how to deactivate and, if needed, reactivate mailboxes.
Contact us to talk about archiving leavers' mailboxes. For the product overview, see NinjaOne Archiver; for set-up detail, how Archiver is set up.
How Forever Systems helps with email archiving
We are an independent UK IT and cyber security provider. We supply NinjaOne SaaS Backup with Archiver for organisations on Microsoft 365 or Google Workspace, and help you get the archive set up, the policies right and the people who need it confident using it.
- Scoping: we look at your mailboxes, leavers, legacy archives and record-keeping obligations, and what your Microsoft 365 or Google Workspace plan already includes, before suggesting anything new
- Set-up: we can configure journaling for Exchange Online or Google Workspace, connect the archive and check that mail is arriving
- Retention and legal hold: we help you turn your email retention policy into archive rules, and show your compliance or HR lead how to search, hold and export
- Leavers and legacy archives: we can help you plan how former employees' mail and older archives are brought across, with the approach confirmed at quote
- Backup alongside the archive: the same NinjaOne per-user licence also covers backup of your Microsoft 365 or Google Workspace data, so recovery and record-keeping are planned together
We work with businesses, schools, charities and public sector organisations. If you also need wider protection, see our independent cloud security guides.
Frequently asked questions
What does deactivate do in NinjaOne SaaS Backup?
It stops backup for that mailbox, disables the user's login and keeps the data already backed up. On the Archiver plan, a deactivated mailbox archives no new mail and only administrators can access it. It can be reactivated later.
Why does a mailbox show as Inactive?
NinjaOne marks a mailbox Inactive when the account no longer has a valid mail licence in Microsoft 365 or Google Workspace. Backup stops, but the data already captured remains.
Do deactivated mailboxes use a licence?
Not up to a limit. NinjaOne's help centre says 20% of purchased seats can be deactivated without using a licence; for example, 2 of 10 seats. Beyond that, deactivated mailboxes use licences. We confirm how leavers count when we quote.
Can I delete an archived mailbox?
Not from the portal. On the Archiver plan, archived mailboxes can only be deactivated; deleting archived data has to be requested from NinjaOne support and needs approval. Deleting purges the backed-up data, so check holds and retention first.
Can a deactivated mailbox be reactivated?
Yes. NinjaOne says a deactivated email address can be reactivated later. Before you do, check the account still has a mail licence in Microsoft 365 or Google Workspace and is in the journaling scope, so new mail is captured again.
Is NinjaOne's Inactive status the same as a Microsoft inactive mailbox?
No. NinjaOne's Inactive status means the account lost its mail licence. A Microsoft 365 inactive mailbox is a deleted user's mailbox kept in your tenant because a hold or retention policy applied to it.
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